Browsing by Author "Demirkiran, Goekhan"

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    Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon
    (INST ENGINEERING TECHNOLOGY-IET, 2020) Goekhan Demirkiran; Guleser Kalayc Demir; Cuneyt Guzelis; Guzelis, Cuneyt; Demirkiran, Goekhan; Demir, Guleser Kalayci
    Double-strand break-induced (DSB) cells send signal that induces DSBs in neighbour cells resulting in the interaction among cells sharing the same medium. Since p53 network gives oscillatory response to DSBs such interaction among cells could be modelled as an excitatory coupling of p53 network oscillators. This study proposes a plausible coupling model of three-mode two-dimensional oscillators which models the p53-mediated cell fate selection in globally coupled DSB-induced cells. The coupled model consists of ATM and Wip1 proteins as variables. The coupling mechanism is realised through ATM variable via a mean-field modelling the bystander signal in the intercellular medium. Investigation of the model reveals that the coupling generates more sensitive DNA damage response by affecting cell fate selection. Additionally the authors search for the cause-effect relationship between coupled p53 network oscillators and bystander effect (BE) endpoints. For this they search for the possible values of uncertain parameters that may replicate BE experiments' results. At certain parametric regions there is a correlation between the outcomes of cell fate and endpoints of BE suggesting that the intercellular coupling of p53 network may manifest itself as the form of observed BEs.