Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon

dc.contributor.author Goekhan Demirkiran
dc.contributor.author Guleser Kalayc Demir
dc.contributor.author Cuneyt Guzelis
dc.contributor.author Guzelis, Cuneyt
dc.contributor.author Demirkiran, Goekhan
dc.contributor.author Demir, Guleser Kalayci
dc.date APR
dc.date.accessioned 2025-10-06T16:21:29Z
dc.date.issued 2020
dc.description.abstract Double-strand break-induced (DSB) cells send signal that induces DSBs in neighbour cells resulting in the interaction among cells sharing the same medium. Since p53 network gives oscillatory response to DSBs such interaction among cells could be modelled as an excitatory coupling of p53 network oscillators. This study proposes a plausible coupling model of three-mode two-dimensional oscillators which models the p53-mediated cell fate selection in globally coupled DSB-induced cells. The coupled model consists of ATM and Wip1 proteins as variables. The coupling mechanism is realised through ATM variable via a mean-field modelling the bystander signal in the intercellular medium. Investigation of the model reveals that the coupling generates more sensitive DNA damage response by affecting cell fate selection. Additionally the authors search for the cause-effect relationship between coupled p53 network oscillators and bystander effect (BE) endpoints. For this they search for the possible values of uncertain parameters that may replicate BE experiments' results. At certain parametric regions there is a correlation between the outcomes of cell fate and endpoints of BE suggesting that the intercellular coupling of p53 network may manifest itself as the form of observed BEs.
dc.identifier.doi 10.1049/iet-syb.2019.0081
dc.identifier.issn 1751-8849
dc.identifier.issn 1751-8857
dc.identifier.scopus 2-s2.0-85082004657
dc.identifier.uri http://dx.doi.org/10.1049/iet-syb.2019.0081
dc.identifier.uri https://gcris.yasar.edu.tr/handle/123456789/6902
dc.identifier.uri https://doi.org/10.1049/iet-syb.2019.0081
dc.language.iso English
dc.publisher INST ENGINEERING TECHNOLOGY-IET
dc.relation.ispartof IET Systems Biology
dc.rights info:eu-repo/semantics/openAccess
dc.source IET SYSTEMS BIOLOGY
dc.subject biological effects of ionising particles, molecular biophysics, biochemistry, DNA, cellular biophysics, physiological models, biomolecular effects of radiation, cellular effects of radiation, biological effects of X-rays, oscillations, proteins, three-mode two-dimensional oscillators, p53-mediated cell fate selection, globally coupled DSB-induced cells, coupled model consists, coupling mechanism, ATM variable, bystander signal, intercellular medium, sensitive DNA damage response, coupled p53 network oscillators, intercellular coupling, cell fate selection model, double-strand break-induced cells, DSBs, neighbour cells, oscillatory response, excitatory coupling, plausible coupling model
dc.subject DOUBLE-STRAND BREAKS, DOSE HYPER-RADIOSENSITIVITY, BYSTANDER RESPONSE, CIRCADIAN CLOCKS, NITRIC-OXIDE, RADIATION, P53, COMMUNICATION, REPAIR, INITIATION
dc.subject Oscillatory Response
dc.subject Cellular Biophysics
dc.subject ATM Variable
dc.subject DSBs
dc.subject Neighbour Cells
dc.subject Physiological Models
dc.subject Globally Coupled DSB-Induced Cells
dc.subject DNA
dc.subject proteinS
dc.subject Excitatory Coupling
dc.subject Biological Effects of Ionising Particles
dc.subject Coupled P53 Network Oscillators
dc.subject Biological Effects of X-Rays
dc.subject Oscillations
dc.subject Coupled Model Consists
dc.subject Cell Fate Selection Model
dc.subject Plausible Coupling Model
dc.subject Coupling Mechanism
dc.subject Sensitive DNA Damage Response
dc.subject Biomolecular Effects of Radiation
dc.subject Bystander Signal
dc.subject Three-Mode Two-Dimensional Oscillators
dc.subject P53-Mediated Cell Fate Selection
dc.subject Intercellular Medium
dc.subject Biochemistry
dc.subject Intercellular Coupling
dc.subject Double-Strand Break-Induced Cells
dc.subject Molecular Biophysics
dc.subject Cellular Effects of Radiation
dc.title Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon
dc.type Article
dspace.entity.type Publication
gdc.author.id Demirkıran, Gökhan/0000-0002-0076-6036
gdc.author.id Kalaycı Demir, Güleser/0000-0003-3808-5305
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gdc.author.scopusid 55937768800
gdc.author.scopusid 7004830013
gdc.author.wosid Demirkıran, Gökhan/JAC-5273-2023
gdc.author.wosid Kalaycı Demir, Güleser/O-7249-2019
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gdc.description.department
gdc.description.departmenttemp [Demirkiran, Goekhan; Guzelis, Cuneyt] Yasar Univ, Elect & Elect Engn, Selcuk Yasar Kampusu, Izmir, Turkey; [Demir, Guleser Kalayci] Dokuz Eylul Univ, Elect & Elect Engn, Izmir, Turkey
gdc.description.endpage 106
gdc.description.issue 2
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
gdc.description.startpage 96
gdc.description.volume 14
gdc.description.woscitationindex Science Citation Index Expanded
gdc.identifier.openalex W2992904172
gdc.identifier.pmid 32196468
gdc.identifier.wos WOS:000543038600006
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gdc.oaire.isgreen true
gdc.oaire.keywords Intracellular Space
gdc.oaire.keywords Uncertainty
gdc.oaire.keywords DNA Breaks, Double-Stranded
gdc.oaire.keywords Bystander Effect
gdc.oaire.keywords Tumor Suppressor Protein p53
gdc.oaire.keywords Models, Biological
gdc.oaire.keywords DNA Damage
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gdc.virtual.author Güzeliş, Cüneyt
gdc.virtual.author Demirkiran, Gökhan
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oaire.citation.endPage 106
oaire.citation.startPage 96
person.identifier.orcid Kalayci Demir- Guleser/0000-0003-3808-5305, Demirkiran- Gokhan/0000-0002-0076-6036,
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