Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon

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Date

2020

Authors

Gökhan Demirkıran
Güleser Kalayci Demir
Cüneyt Güzeliş

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Publisher

Institution of Engineering and Technology jbristow@theiet.org

Open Access Color

GOLD

Green Open Access

Yes

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Abstract

Double-strand break-induced (DSB) cells send signal that induces DSBs in neighbour cells resulting in the interaction among cells sharing the same medium. Since p53 network gives oscillatory response to DSBs such interaction among cells could be modelled as an excitatory coupling of p53 network oscillators. This study proposes a plausible coupling model of three-mode two-dimensional oscillators which models the p53-mediated cell fate selection in globally coupled DSBinduced cells. The coupled model consists of ATM and Wip1 proteins as variables. The coupling mechanism is realised through ATM variable via a mean-field modelling the bystander signal in the intercellular medium. Investigation of the model reveals that the coupling generates more sensitive DNA damage response by affecting cell fate selection. Additionally the authors search for the cause-effect relationship between coupled p53 network oscillators and bystander effect (BE) endpoints. For this they search for the possible values of uncertain parameters that may replicate BE experiments' results. At certain parametric regions there is a correlation between the outcomes of cell fate and endpoints of BE suggesting that the intercellular coupling of p53 network may manifest itself as the form of observed BEs. © 2020 Elsevier B.V. All rights reserved.

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Keywords

Tumor Suppressor Protein P53, Cells, Internet Protocols, Microwave Oscillators, Uncertainty Analysis, Cause-effect Relationships, Coupling Mechanism, Dna Damage Response, Double Strand Breaks, Excitatory Coupling, Intercellular Couplings, Oscillatory Response, Uncertain Parameters, Cytology, Protein P53, Biological Model, Bystander Effect (cell), Dna Damage, Double Stranded Dna Break, Genetics, Intracellular Space, Metabolism, Uncertainty, Bystander Effect, Dna Breaks Double-stranded, Dna Damage, Intracellular Space, Models Biological, Tumor Suppressor Protein P53, Uncertainty, Cells, Internet protocols, Microwave oscillators, Uncertainty analysis, Cause-effect relationships, Coupling mechanism, DNA damage response, Double strand breaks, Excitatory coupling, Intercellular couplings, Oscillatory response, Uncertain parameters, Cytology, protein p53, biological model, bystander effect (cell), DNA damage, double stranded DNA break, genetics, intracellular space, metabolism, uncertainty, Bystander Effect, DNA Breaks Double-Stranded, DNA Damage, Intracellular Space, Models Biological, Tumor Suppressor Protein p53, Uncertainty, Intracellular Space, Uncertainty, DNA Breaks, Double-Stranded, Bystander Effect, Tumor Suppressor Protein p53, Models, Biological, DNA Damage

Fields of Science

0301 basic medicine, 0303 health sciences, 03 medical and health sciences

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OpenCitations Citation Count
1

Source

IET Systems Biology

Volume

14

Issue

Start Page

96

End Page

106
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CrossRef : 1

Scopus : 1

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Mendeley Readers : 8

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