Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon

dc.contributor.author Gökhan Demirkıran
dc.contributor.author Güleser Kalayci Demir
dc.contributor.author Cüneyt Güzeliş
dc.date.accessioned 2025-10-06T17:50:59Z
dc.date.issued 2020
dc.description.abstract Double-strand break-induced (DSB) cells send signal that induces DSBs in neighbour cells resulting in the interaction among cells sharing the same medium. Since p53 network gives oscillatory response to DSBs such interaction among cells could be modelled as an excitatory coupling of p53 network oscillators. This study proposes a plausible coupling model of three-mode two-dimensional oscillators which models the p53-mediated cell fate selection in globally coupled DSBinduced cells. The coupled model consists of ATM and Wip1 proteins as variables. The coupling mechanism is realised through ATM variable via a mean-field modelling the bystander signal in the intercellular medium. Investigation of the model reveals that the coupling generates more sensitive DNA damage response by affecting cell fate selection. Additionally the authors search for the cause-effect relationship between coupled p53 network oscillators and bystander effect (BE) endpoints. For this they search for the possible values of uncertain parameters that may replicate BE experiments' results. At certain parametric regions there is a correlation between the outcomes of cell fate and endpoints of BE suggesting that the intercellular coupling of p53 network may manifest itself as the form of observed BEs. © 2020 Elsevier B.V. All rights reserved.
dc.identifier.doi 10.1049/iet-syb.2019.0081
dc.identifier.issn 17518849, 17518857
dc.identifier.issn 1751-8849
dc.identifier.issn 1751-8857
dc.identifier.uri https://www.scopus.com/inward/record.uri?eid=2-s2.0-85082004657&doi=10.1049%2Fiet-syb.2019.0081&partnerID=40&md5=905f16ceae69e054ea9a9abbd5791498
dc.identifier.uri https://gcris.yasar.edu.tr/handle/123456789/9226
dc.language.iso English
dc.publisher Institution of Engineering and Technology jbristow@theiet.org
dc.relation.ispartof IET Systems Biology
dc.source IET Systems Biology
dc.subject Tumor Suppressor Protein P53, Cells, Internet Protocols, Microwave Oscillators, Uncertainty Analysis, Cause-effect Relationships, Coupling Mechanism, Dna Damage Response, Double Strand Breaks, Excitatory Coupling, Intercellular Couplings, Oscillatory Response, Uncertain Parameters, Cytology, Protein P53, Biological Model, Bystander Effect (cell), Dna Damage, Double Stranded Dna Break, Genetics, Intracellular Space, Metabolism, Uncertainty, Bystander Effect, Dna Breaks Double-stranded, Dna Damage, Intracellular Space, Models Biological, Tumor Suppressor Protein P53, Uncertainty
dc.subject Cells, Internet protocols, Microwave oscillators, Uncertainty analysis, Cause-effect relationships, Coupling mechanism, DNA damage response, Double strand breaks, Excitatory coupling, Intercellular couplings, Oscillatory response, Uncertain parameters, Cytology, protein p53, biological model, bystander effect (cell), DNA damage, double stranded DNA break, genetics, intracellular space, metabolism, uncertainty, Bystander Effect, DNA Breaks Double-Stranded, DNA Damage, Intracellular Space, Models Biological, Tumor Suppressor Protein p53, Uncertainty
dc.title Coupling of cell fate selection model enhances DNA damage response and may underlie BE phenomenon
dc.type Article
dspace.entity.type Publication
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gdc.coar.type text::journal::journal article
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gdc.description.endpage 106
gdc.description.startpage 96
gdc.description.volume 14
gdc.identifier.openalex W2992904172
gdc.identifier.pmid 32196468
gdc.index.type Scopus
gdc.oaire.accesstype GOLD
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gdc.oaire.impulse 1.0
gdc.oaire.influence 2.4059699E-9
gdc.oaire.isgreen true
gdc.oaire.keywords Intracellular Space
gdc.oaire.keywords Uncertainty
gdc.oaire.keywords DNA Breaks, Double-Stranded
gdc.oaire.keywords Bystander Effect
gdc.oaire.keywords Tumor Suppressor Protein p53
gdc.oaire.keywords Models, Biological
gdc.oaire.keywords DNA Damage
gdc.oaire.popularity 1.996594E-9
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gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 0303 health sciences
gdc.oaire.sciencefields 03 medical and health sciences
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oaire.citation.endPage 106
oaire.citation.startPage 96
person.identifier.scopus-author-id Demirkıran- Gökhan (57200319546), Demir- Güleser Kalayci (7004830013), Güzeliş- Cüneyt (55937768800)
publicationissue.issueNumber 2
publicationvolume.volumeNumber 14
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